Haplotype-Specific DNA Methylation
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SNP
Gene
GWAS Disease/Phenotype
Genomic Coordinates
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TNFRSF6B
hits 5
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1
rs6010620
chr20:62309838-62309839
genes 2
GWAS disease/phenotype 2
rs6010620
LD Block:
chr20:61994263-62399641
Genes:
RTEL1
TNFRSF6B
GWAS Disease/Phenotype:
Glioma
Glioma (high-grade)
2
rs2297441
chr20:62327581-62327582
genes 6
GWAS disease/phenotype 1
rs2297441
LD Block:
chr20:61994263-62399641
Genes:
RTEL1
SLC2A4RG
STMN3
TNFRSF6B
ZBTB46
ZGPAT
GWAS Disease/Phenotype:
Ulcerative colitis
3
rs2315008
chr20:62343955-62343956
genes 1
GWAS disease/phenotype 1
rs2315008
LD Block:
chr20:61994263-62399641
Genes:
TNFRSF6B
GWAS Disease/Phenotype:
Inflammatory bowel disease
4
rs6062504
chr20:62348906-62348907
genes 4
GWAS disease/phenotype 1
rs6062504
LD Block:
chr20:61994263-62399641
Genes:
LIME1
SLC2A4RG
TNFRSF6B
ZGPAT
GWAS Disease/Phenotype:
Inflammatory bowel disease
5
rs6062509
chr20:62362562-62362563
genes 32
GWAS disease/phenotype 1
rs6062509
LD Block:
chr20:61994263-62399641
Genes:
ABHD16B
ARFRP1
C20orf195
DNAJC5
EEF1A2
GMEB2
LIME1
LOC100505815
MIR1914
MIR647
MIR941-1
MIR941-2
MIR941-3
MIR941-4
PPDPF
PRIC285
PRPF6
PTK6
RTEL1
RTEL1-TN
RTEL1-TNFRSF6B
SAMD10
SLC2A4RG
SRMS
STMN3
TNFRSF6B
TPD52L2
UCKL1
UCKL1-AS1
ZBTB46
ZGPAT
ZNF512B
GWAS Disease/Phenotype:
Prostate cancer
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